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    Phototropic-responsive NPH3 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821773, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Phototropic-responsive NPH3 family protein
    Primary source
    TAIR:AT3G22104
    Locus tag
    AT3G22104
    See related
    Araport:AT3G22104
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (7789342..7792410)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene 20S proteasome alpha subunit C1 Neighboring gene ncRNA Neighboring gene cell wall-plasma membrane linker protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001338561.1
    NM_001338562.1
    NM_001338563.1
    NM_113107.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Phototropic-responsive NPH3 family protein
    NP_188849.3
    • Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G19850.1); Has 844 Blast hits to 828 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 27; Fungi - 3; Plants - 786; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7789342..7792410
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113107.7 → NP_188849.3  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188849.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C5J4, Q9LIF0
      UniProtKB/TrEMBL
      A0A178VJV4
      Conserved Domains (2) summary
      smart00225
      Location:14 → 105
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam03000
      Location:188 → 409
      NPH3; NPH3 family

    2. NM_001338561.1 → NP_001327525.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJV4, A0A1I9LSK9

    3. NM_001338562.1 → NP_001327524.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJV4, A0A1I9LSK9

    4. NM_001338563.1 → NP_001327526.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJV4, A0A1I9LSK9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C5J4.1

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