U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    BAT5 bile acid transporter 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826811, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    BAT5
    Official Full Name
    bile acid transporter 5
    Primary source
    TAIR:AT4G12030
    Locus tag
    AT4G12030
    See related
    Araport:AT4G12030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    BASS5; bile acid transporter 5; BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5; F16J13.100; F16J13_100
    Summary
    Required for the biosynthesis of methionine-derived glucosinolates. Involved in the transport of 2-keto acids between chloroplasts and the cytosol.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See BAT5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (7210807..7213376)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene protein kinase family protein Neighboring gene A20/AN1-like zinc finger family protein Neighboring gene ncRNA Neighboring gene Putative AT-hook DNA-binding family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis bile acid:sodium symporter family protein 5 is involved in methionine-derived glucosinolate biosynthesis. Sawada Y, et al. Plant Cell Physiol, 2009 Sep. PMID 19633020, Free PMC Article
    2. The plastidic bile acid transporter 5 is required for the biosynthesis of methionine-derived glucosinolates in Arabidopsis thaliana. Gigolashvili T, et al. Plant Cell, 2009 Jun. PMID 19542295, Free PMC Article
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. BAT5 is identified as the first transporter component of the aliphatic glucosinolate biosynthetic pathway.
      Title: The plastidic bile acid transporter 5 is required for the biosynthesis of methionine-derived glucosinolates in Arabidopsis thaliana.
    2. BASS5 (At4g12030) acts as a transporter of methionine derivatives across chloroplast membranes.
      Title: Arabidopsis bile acid:sodium symporter family protein 5 is involved in methionine-derived glucosinolate biosynthesis.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001340768.1
    NM_117273.3
    NM_202809.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables monocarboxylic acid transmembrane transporter activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within glucosinolate biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in glucosinolate biosynthetic process from homomethionine IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to wounding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    bile acid transporter 5
    NP_001319909.1
    • bile acid transporter 5 (BAT5); CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); BEST Arabidopsis thaliana protein match is: Sodium Bile acid symporter family (TAIR:AT4G22840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974538.1
    • bile acid transporter 5 (BAT5); CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); BEST Arabidopsis thaliana protein match is: Sodium Bile acid symporter family (TAIR:AT4G22840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7210807..7213376
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340769.1 → NP_001328579.1  bile acid transporter 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JPW1
      Conserved Domains (1) summary
      COG0385
      Location:2 → 272
      YfeH; Predicted Na+-dependent transporter [General function prediction only]

    2. NM_001340770.1 → NP_001328580.1  bile acid transporter 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B530

    3. NM_001340768.1 → NP_001319909.1  bile acid transporter 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JPW1
      Conserved Domains (1) summary
      COG0385
      Location:2 → 272
      YfeH; Predicted Na+-dependent transporter [General function prediction only]

    4. NM_202809.3 → NP_974538.1  bile acid transporter 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974538.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JPW1, Q94A17, Q9SZ68
      UniProtKB/TrEMBL
      A0A654FNC3, A0A7G2F1T1
      Conserved Domains (1) summary
      COG0385
      Location:106 → 406
      YfeH; Predicted Na+-dependent transporter [General function prediction only]

    5. NM_117273.3 → NP_567385.1  bile acid transporter 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567385.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JPW1
      Conserved Domains (1) summary
      COG0385
      Location:2 → 272
      YfeH; Predicted Na+-dependent transporter [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JPW1.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.