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    Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831431, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Alpha-L RNA-binding motif/Ribosomal protein S4 family protein
    Primary source
    TAIR:AT5G15750
    Locus tag
    AT5G15750
    See related
    Araport:AT5G15750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14F8.130; F14F8_130
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (5141035..5142890)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene O-fucosyltransferase family protein Neighboring gene uncharacterized protein Neighboring gene Ribosomal protein PSRP-3/Ycf65 Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene glucose-6-phosphate acetyltransferase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_121580.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Alpha-L RNA-binding motif/Ribosomal protein S4 family protein
    NP_568321.1
    • Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; FUNCTIONS IN: RNA binding, rRNA binding; LOCATED IN: cytosolic small ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4 (InterPro:IPR001912), RNA-binding S4 (InterPro:IPR002942); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5141035..5142890
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121580.3 → NP_568321.1  Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568321.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMN1, Q683D4, Q8LCM3
      Conserved Domains (1) summary
      COG0522
      Location:1 → 167
      RpsD; Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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