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    KIWI ssDNA-binding transcriptional regulator [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830784, updated on 18-Sep-2024

    Summary

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    Official Symbol
    KIWI
    Official Full Name
    ssDNA-binding transcriptional regulator
    Primary source
    TAIR:AT5G09250
    Locus tag
    AT5G09250
    See related
    Araport:AT5G09250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T2K12.10
    Summary
    putative transcriptional co-activator (KIWI) mRNA, complete
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    Genomic context

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    See KIWI in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (2875136..2876609, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene sirtuin 2 Neighboring gene ssDNA-binding transcriptional regulator Neighboring gene vacuolar protein sorting-associated protein 20.2 Neighboring gene uncharacterized protein Neighboring gene Pectin lyase-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis Novel Microgametophyte Defective Mutant 1 Is Required for Pollen Viability via Influencing Intine Development in Arabidopsis. Mi L, et al. Front Plant Sci, 2022. PMID 35498668, Free PMC Article
    2. Isolation of putative plant transcriptional coactivators using a modified two-hybrid system incorporating a GFP reporter gene. Cormack RS, et al. Plant J, 1998 Jun. PMID 9681033
    3. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article
    4. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001125722.2
    NM_001343039.1
    NM_001343040.1
    NM_001343041.1
    NM_120961.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription coactivator activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in megagametogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of transcription initiation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ssDNA-binding transcriptional regulator
    NP_001318516.1
    • KIWI; FUNCTIONS IN: protein binding, transcription coactivator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Transcriptional coactivator p15 (InterPro:IPR003173); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT5G09240.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_196487.1
    • KIWI; FUNCTIONS IN: protein binding, transcription coactivator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator p15 (InterPro:IPR003173), ssDNA-binding transcriptional regulator (InterPro:IPR009044); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT5G09240.1); Has 436 Blast hits to 424 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 177; Fungi - 115; Plants - 101; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2875136..2876609 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120961.3 → NP_196487.1  ssDNA-binding transcriptional regulator [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196487.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65154
      UniProtKB/TrEMBL
      A0A654FZZ8, Q0WS63
      Conserved Domains (1) summary
      pfam02229
      Location:48 → 95
      PC4; Transcriptional Coactivator p15 (PC4)

    2. NM_001343040.1 → NP_001332125.1  ssDNA-binding transcriptional regulator [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BG06

    3. NM_001343041.1 → NP_001332126.1  ssDNA-binding transcriptional regulator [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFY1

    4. NM_001343039.1 → NP_001318516.1  ssDNA-binding transcriptional regulator [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U7G3, A0A384LE42, B3H688

    5. NM_001125722.2 → NP_001119194.1  ssDNA-binding transcriptional regulator [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119194.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U7G3, A0A384LE42, B3H688
      Conserved Domains (1) summary
      pfam02229
      Location:48 → 81
      PC4; Transcriptional Coactivator p15 (PC4)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65154.1

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