U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    MYB104 myb domain protein 104 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817236, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    MYB104
    Official Full Name
    myb domain protein 104
    Primary source
    TAIR:AT2G26950
    Locus tag
    AT2G26950
    See related
    Araport:AT2G26950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtMYB104; myb domain protein 104; T20P8.20; T20P8_20
    Summary
    Member of the R2R3 factor gene family.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See MYB104 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (11500721..11502136, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Ubiquitin-associated/translation elongation factor EF1B protein Neighboring gene 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase Neighboring gene C2H2-type zinc finger family protein Neighboring gene myb domain protein 81 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. MEDIATOR25 acts as an integrative hub for the regulation of jasmonate-responsive gene expression in Arabidopsis. Çevik V, et al. Plant Physiol, 2012 Sep. PMID 22822211, Free PMC Article
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_128252.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    myb domain protein 104
    NP_180263.5
    • myb domain protein 104 (MYB104); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 81 (TAIR:AT2G26960.1); Has 8267 Blast hits to 7915 proteins in 468 species: Archae - 0; Bacteria - 0; Metazoa - 560; Fungi - 403; Plants - 5591; Viruses - 3; Other Eukaryotes - 1710 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11500721..11502136 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128252.6 → NP_180263.5  myb domain protein 104 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180263.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IVM2, Q9SLH2, Q9SM27
      UniProtKB/TrEMBL
      A0A5S9X1U5
      Conserved Domains (3) summary
      smart00717
      Location:18 → 67
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:71 → 113
      Myb_DNA-binding; Myb-like DNA-binding domain
      pfam13921
      Location:21 → 82
      Myb_DNA-bind_6; Myb-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SM27.3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools