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    Low temperature and salt responsive protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816938, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Low temperature and salt responsive protein family
    Primary source
    TAIR:AT2G24040
    Locus tag
    AT2G24040
    See related
    Araport:AT2G24040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T29E15.24; T29E15_24
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (10223857..10225171)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase-like 23 Neighboring gene Putative BCR, YbaB family COG0718 Neighboring gene zinc ion binding / nucleic acid binding protein Neighboring gene MIF4G domain-containing protein / MA3 domain-containing protein Neighboring gene Translation initiation factor 3 protein Neighboring gene QWRF motif protein (DUF566)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001335915.1
    NM_127966.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Low temperature and salt responsive protein family
    NP_179982.1
    • Low temperature and salt responsive protein family; INVOLVED IN: response to cold, hyperosmotic salinity response; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT4G28088.1); Has 850 Blast hits to 850 proteins in 229 species: Archae - 0; Bacteria - 186; Metazoa - 38; Fungi - 231; Plants - 380; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10223857..10225171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127966.5 → NP_179982.1  Low temperature and salt responsive protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179982.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82232, Q53XD6
      UniProtKB/TrEMBL
      A0A178VW91, A0A384LJH1, B6DVK0
      Conserved Domains (1) summary
      pfam01679
      Location:8 → 56
      Pmp3; Proteolipid membrane potential modulator

    2. NM_001335915.1 → NP_001323801.1  Low temperature and salt responsive protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AY72
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82232.1

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