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    PFK5 phosphofructokinase 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816781, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PFK5
    Official Full Name
    phosphofructokinase 5
    Primary source
    TAIR:AT2G22480
    Locus tag
    AT2G22480
    See related
    Araport:AT2G22480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14M13.12; F14M13_12; phosphofructokinase 5
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    Genomic context

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    See PFK5 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Sequence:
    Chromosome: 2; NC_003071.7 (9545283..9548640)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene arabinogalactan protein 2 Neighboring gene GRAM domain family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Cyclin D2;1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Biochemical Basis for Redox Regulation of Chloroplast-Localized Phosphofructokinase from Arabidopsis thaliana. Yoshida K, et al. Plant Cell Physiol, 2021 Jul 17. PMID 33416847
    2. Characterisation of the ATP-dependent phosphofructokinase gene family from Arabidopsis thaliana. Mustroph A, et al. FEBS Lett, 2007 May 29. PMID 17485088
    3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Biochemical Basis for Redox Regulation of Chloroplast-Localized Phosphofructokinase from Arabidopsis thaliana.
      Title: Biochemical Basis for Redox Regulation of Chloroplast-Localized Phosphofructokinase from Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_179694.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 6-phosphofructokinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fructose 6-phosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within glycolytic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    phosphofructokinase 5
    NP_850025.1
    • phosphofructokinase 5 (PFK5); CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: phosphofructokinase 4 (TAIR:AT5G61580.1); Has 7923 Blast hits to 7389 proteins in 2127 species: Archae - 28; Bacteria - 5127; Metazoa - 660; Fungi - 395; Plants - 392; Viruses - 2; Other Eukaryotes - 1319 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9545283..9548640
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179694.4 → NP_850025.1  phosphofructokinase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850025.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYN6, Q9SJY6
      UniProtKB/TrEMBL
      A0A178VR33, A0A5S9X096, A0A654EV37
      Conserved Domains (1) summary
      PLN02884
      Location:127 → 537
      PLN02884; 6-phosphofructokinase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VYN6.1

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