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    GIF2 GRF1-interacting factor 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839278, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GIF2
    Official Full Name
    GRF1-interacting factor 2
    Primary source
    TAIR:AT1G01160
    Locus tag
    AT1G01160
    See related
    Araport:AT1G01160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6F3.29; GRF1-interacting factor 2
    Summary
    Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA
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    Genomic context

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    See GIF2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (72339..74096)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene CBL-interacting protein kinase 9 Neighboring gene Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein Neighboring gene ncRNA Neighboring gene ozone-responsive stress-like protein (DUF1138) Neighboring gene ncRNA Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Spatio-temporal distribution patterns of GRF-INTERACTING FACTOR expression and leaf size control. Lee BH, et al. Plant Signal Behav, 2014. PMID 25763702, Free PMC Article
    2. The Arabidopsis thaliana GRF-INTERACTING FACTOR gene family plays an essential role in control of male and female reproductive development. Lee BH, et al. Dev Biol, 2014 Feb 1. PMID 24355747
    3. The Arabidopsis GRF-INTERACTING FACTOR gene family performs an overlapping function in determining organ size as well as multiple developmental properties. Lee BH, et al. Plant Physiol, 2009 Oct. PMID 19648231, Free PMC Article
    4. A transcriptional coactivator, AtGIF1, is involved in regulating leaf growth and morphology in Arabidopsis. Kim JH, et al. Proc Natl Acad Sci U S A, 2004 Sep 7. PMID 15326298, Free PMC Article
    5. GIF Transcriptional Coregulators Control Root Meristem Homeostasis. Ercoli MF, et al. Plant Cell, 2018 Feb. PMID 29352064, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001160826.1
    NM_099998.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription coactivator activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of cell cycle IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GRF1-interacting factor 2
    NP_001154298.1
    • GRF1-interacting factor 2 (GIF2); FUNCTIONS IN: protein binding, transcription coactivator activity; INVOLVED IN: cell proliferation, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1); Has 35 Blast hits to 35 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_563619.1
    • GRF1-interacting factor 2 (GIF2); CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1); Has 425 Blast hits to 425 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 291; Fungi - 20; Plants - 89; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      72339..74096
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_099998.4 → NP_563619.1  GRF1-interacting factor 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563619.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9MAL9
      UniProtKB/TrEMBL
      A0A178W6L5, A0A5S9S103, A0A654E6V8
      Conserved Domains (1) summary
      pfam05030
      Location:22 → 73
      SSXT; SSXT protein (N-terminal region)

    2. NM_001160826.1 → NP_001154298.1  GRF1-interacting factor 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154298.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9S103, F4HQJ3
      Conserved Domains (1) summary
      pfam05030
      Location:63 → 108
      SSXT; SSXT protein (N-terminal region)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9MAL9.1

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