NagB/RpiA/CoA transferase-like superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: NagB/RpiA/CoA transferase-like superfamily protein
Primary source: TAIR:AT1G72340
Locus tag: AT1G72340
See related: Araport:AT1G72340
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T10D10.19; T10D10_19
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 5

Sequence:: Chromosome: 1; NC_003070.9 (27236797..27238720)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001334524.1

Supported by ESTs:

NM_001334525.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: NagB/RpiA/CoA transferase-like superfamily protein

NP_001319366.1

NagB/RpiA/CoA transferase-like superfamily protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: Eukaryotic translation initiation factor 2B (eIF-2B) family protein (TAIR:AT1G53900.1); Has 4473 Blast hits to 4473 proteins in 1031 species: Archae - 373; Bacteria - 1735; Metazoa - 520; Fungi - 473; Plants - 219; Viruses - 0; Other Eukaryotes - 1153 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

27236797..27238720

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_105893.4 → NP_565041.2 NagB/RpiA/CoA transferase-like superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178W221, A0A1P8AVS2
NM_001334524.1 → NP_001319366.1 NagB/RpiA/CoA transferase-like superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178W221, A0A654EPW2, Q8W4G0

Conserved Domains (1) summary

pfam01008
Location:113 → 370

IF-2B; Initiation factor 2 subunit family
NM_001334525.1 → NP_001322990.1 NagB/RpiA/CoA transferase-like superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178W221, A0A1P8AVQ1