Transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Transducin family protein / WD-40 repeat family protein
Primary source: TAIR:AT3G33530
Locus tag: AT3G33530
See related: Araport:AT3G33530
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 22

Sequence:: Chromosome: 3; NC_003074.8 (14085248..14093670)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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NM_001161187.2

Supported by ESTs:

NM_001203075.1

Supported by ESTs:

NM_114071.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Transducin family protein / WD-40 repeat family protein

NP_001154659.1

Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G26610.1); Has 161 Blast hits to 141 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 4; Plants - 44; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).

NP_001190004.1

Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G26610.1).

NP_189790.2

Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G26610.1); Has 166 Blast hits to 141 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

14085248..14093670

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001339078.1 → NP_001326679.1 Transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1I9LQ09, A0A7G2ETC5
NM_001339079.1 → NP_001326680.1 Transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1I9LQ10, A0A7G2ETC5
NM_001203075.1 → NP_001190004.1 Transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001190004.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A7G2ETC5, F4JCM7

Conserved Domains (2) summary

sd00039
Location:761 → 794

7WD40; WD40 repeat [structural motif]

cl02567
Location:753 → 847

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
NM_114071.2 → NP_189790.2 Transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_189790.2

Status: REVIEWED

UniProtKB/TrEMBL

A0A7G2ETC5, F4JCM5

Conserved Domains (3) summary

COG2319
Location:534 → 897

WD40; WD40 repeat [General function prediction only]

sd00039
Location:757 → 789

7WD40; WD40 repeat [structural motif]

cl02567
Location:748 → 879

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
NM_001161187.2 → NP_001154659.1 Transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001154659.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A7G2ETC5, F4JCM6

Conserved Domains (2) summary

sd00039
Location:770 → 802

7WD40; WD40 repeat [structural motif]

cl02567
Location:761 → 892

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...