U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RNA-binding CRS1 / YhbY (CRM) domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822377, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    RNA-binding CRS1 / YhbY (CRM) domain protein
    Primary source
    TAIR:AT3G27550
    Locus tag
    AT3G27550
    See related
    Araport:AT3G27550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (10207727..10210231, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cryptic loci regulator Neighboring gene golgin Putative 6 Neighboring gene beta-1,4-N-acetylglucosaminyltransferase family protein Neighboring gene tRNA-Asp Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. CFM9, a Mitochondrial CRM Protein, Is Crucial for Mitochondrial Intron Splicing, Mitochondria Function and Arabidopsis Growth and Stress Responses. Lee K, et al. Plant Cell Physiol, 2019 Nov 1. PMID 31359042
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001338891.1
    NM_113671.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in Group II intron splicing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in mitochondrial polycistronic RNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    RNA-binding CRS1 / YhbY (CRM) domain protein
    NP_001319656.1
    • RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G28480.1); Has 9740 Blast hits to 5375 proteins in 499 species: Archae - 16; Bacteria - 3620; Metazoa - 2600; Fungi - 970; Plants - 681; Viruses - 92; Other Eukaryotes - 1761 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10207727..10210231 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338892.1 → NP_001327916.1  RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTS8, A0A5S9XGI4, A0A654FB80
      Conserved Domains (1) summary
      smart01103
      Location:180 → 232
      CRS1_YhbY; Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly

    2. NM_001338891.1 → NP_001319656.1  RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LT57
      UniProtKB/TrEMBL
      A0A178V746
      Conserved Domains (1) summary
      cl00663
      Location:124 → 176
      CRS1_YhbY; CRS1 / YhbY (CRM) domain

    3. NM_113671.3 → NP_189392.1  RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189392.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LT57
      UniProtKB/TrEMBL
      A0A178V746
      Conserved Domains (1) summary
      cl00663
      Location:124 → 176
      CRS1_YhbY; CRS1 / YhbY (CRM) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LT57.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.