U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PDIL5-1 PDI-like 5-1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837311, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PDIL5-1
    Official Full Name
    PDI-like 5-1
    Primary source
    TAIR:AT1G07960
    Locus tag
    AT1G07960
    See related
    Araport:AT1G07960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATPDIL5-1; PDI-like 5-1; T6D22.5; T6D22_5
    Summary
    Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PDIL5-1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (2467145..2469316)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GTP binding Elongation factor Tu family protein Neighboring gene GTP binding Elongation factor Tu family protein Neighboring gene pseudo Neighboring gene Surfeit locus protein 5 subunit 22 of Mediator complex Neighboring gene cytochrome B561, amino-terminal protein Neighboring gene nuclear factor Y, subunit C10 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. bHLH05 is an interaction partner of MYB51 and a novel regulator of glucosinolate biosynthesis in Arabidopsis. Frerigmann H, et al. Plant Physiol, 2014 Sep. PMID 25049362, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001331745.1
    NM_100670.2
    NM_202058.2
    NM_202059.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    PDI-like 5-1
    NP_001318951.1
    • PDI-like 5-1 (PDIL5-1); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT2G47470.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_172274.1
    • PDI-like 5-1 (PDIL5-1); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT2G47470.1); Has 11046 Blast hits to 9080 proteins in 1903 species: Archae - 38; Bacteria - 4054; Metazoa - 3042; Fungi - 886; Plants - 964; Viruses - 4; Other Eukaryotes - 2058 (source: NCBI BLink).
    NP_973788.1
    • PDI-like 5-1 (PDIL5-1); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT2G47470.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2467145..2469316
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202059.3 → NP_973788.1  PDI-like 5-1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973788.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYD1, Q96313, Q9LN11
      UniProtKB/TrEMBL
      A0A178WDX4, A0A5S9T6M3
      Conserved Domains (1) summary
      cl00388
      Location:27 → 128
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold

    2. NM_100670.2 → NP_172274.1  PDI-like 5-1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172274.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYD1, Q96313, Q9LN11
      UniProtKB/TrEMBL
      A0A178WDX4, A0A5S9T6M3
      Conserved Domains (1) summary
      cl00388
      Location:27 → 128
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold

    3. NM_001331745.1 → NP_001318951.1  PDI-like 5-1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYD1, Q96313, Q9LN11
      UniProtKB/TrEMBL
      A0A178WDX4, A0A5S9T6M3
      Conserved Domains (1) summary
      cl00388
      Location:27 → 128
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold

    4. NM_202058.2 → NP_973787.1  PDI-like 5-1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973787.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYD1, Q96313, Q9LN11
      UniProtKB/TrEMBL
      A0A178WDX4, A0A5S9T6M3
      Conserved Domains (1) summary
      cl00388
      Location:27 → 128
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GYD1.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools