U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    DGD2 digalactosyl diacylglycerol deficient 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827960, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    DGD2
    Official Full Name
    digalactosyl diacylglycerol deficient 2
    Primary source
    TAIR:AT4G00550
    Locus tag
    AT4G00550
    See related
    Araport:AT4G00550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    digalactosyl diacylglycerol deficient 2; DIGALACTOSYLDIACYLGLYCEROL SYNTHASE; F6N23.24; F6N23_24
    Summary
    encodes a UDP-galactose-dependent digalactosyldiacylglycerol(DGDG) synthase. Located in chloroplast outer membrane.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See DGD2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (237901..240579, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene UvrABC system protein A Neighboring gene myb domain protein 3r2 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene NAD-dependent malic enzyme 2 Neighboring gene ncRNA Neighboring gene COP1-interacting protein-like protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Lipid interacting regions in phosphate stress glycosyltransferase atDGD2 from Arabidopsis thaliana. Szpryngiel S, et al. Biochemistry, 2011 May 31. PMID 21506606
    2. Disruption of the two digalactosyldiacylglycerol synthase genes DGD1 and DGD2 in Arabidopsis reveals the existence of an additional enzyme of galactolipid synthesis. Kelly AA, et al. Plant Cell, 2003 Nov. PMID 14600212, Free PMC Article
    3. DGD2, an arabidopsis gene encoding a UDP-galactose-dependent digalactosyldiacylglycerol synthase is expressed during growth under phosphate-limiting conditions. Kelly AA, et al. J Biol Chem, 2002 Jan 11. PMID 11696551
    4. DGD1-independent biosynthesis of extraplastidic galactolipids after phosphate deprivation in Arabidopsis. Härtel H, et al. Proc Natl Acad Sci U S A, 2000 Sep 12. PMID 10973486, Free PMC Article
    5. Three enzyme systems for galactoglycerolipid biosynthesis are coordinately regulated in plants. Benning C, et al. J Biol Chem, 2005 Jan 28. PMID 15590685

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. response model for the interaction of atDGD2 with the membrane bilayer interface is proposed
      Title: Lipid interacting regions in phosphate stress glycosyltransferase atDGD2 from Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_116279.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables UDP-galactosyltransferase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables UDP-glycosyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables digalactosyldiacylglycerol synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables digalactosyldiacylglycerol synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to phosphate starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to phosphate starvation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within galactolipid biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within glycolipid biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast outer membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    digalactosyl diacylglycerol deficient 2
    NP_191964.2
    • digalactosyl diacylglycerol deficient 2 (DGD2); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT3G11670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      237901..240579 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340258.1 → NP_001329549.1  digalactosyl diacylglycerol deficient 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65264, Q56ZV5, Q8W1S0, Q8W1S1, W8PV82
      UniProtKB/TrEMBL
      A0A178V709, A0A5S9XPF6
      Conserved Domains (1) summary
      PLN02846
      Location:3 → 464
      PLN02846; digalactosyldiacylglycerol synthase

    2. NM_116279.5 → NP_191964.2  digalactosyl diacylglycerol deficient 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191964.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65264, Q56ZV5, Q8W1S0, Q8W1S1, W8PV82
      UniProtKB/TrEMBL
      A0A178V709, A0A5S9XPF6
      Conserved Domains (1) summary
      PLN02846
      Location:3 → 464
      PLN02846; digalactosyldiacylglycerol synthase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8W1S1.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools