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    RNA-binding KH domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827566, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-binding KH domain-containing protein
    Primary source
    TAIR:AT4G18375
    Locus tag
    AT4G18375
    See related
    Araport:AT4G18375
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28J12.2; F28J12_2
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (10152402..10155428)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene DEGP protease 5 Neighboring gene ncRNA Neighboring gene Small nuclear ribonucleoprotein family protein Neighboring gene ncRNA Neighboring gene F-box family protein Neighboring gene TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001341281.1
    NM_001341282.1
    NM_117948.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding KH domain-containing protein
    NP_001319984.1
    • RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G46190.1); Has 4753 Blast hits to 2281 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 3318; Fungi - 441; Plants - 848; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
    NP_193572.1
    • RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G46190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10152402..10155428
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117948.5 → NP_193572.1  RNA-binding KH domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193572.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P58223, Q8H0Y7
      UniProtKB/TrEMBL
      A0A178UU63, A0A5S9XTM9, A0A654FQZ7
      Conserved Domains (3) summary
      cd22459
      Location:311 → 381
      KH-I_PEPPER_rpt1_like; first type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana RNA-binding KH domain-containing protein PEPPER and similar proteins
      cd22462
      Location:538 → 603
      KH-I_HEN4_like_rpt5; fifth type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana KH domain-containing protein HEN4 and similar protein
      cl00098
      Location:140 → 212
      KH-I; K homology (KH) RNA-binding domain, type I

    2. NM_001341281.1 → NP_001319984.1  RNA-binding KH domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2H1ZEM6

    3. NM_001341282.1 → NP_001328912.1  RNA-binding KH domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B642, A0A5S9XTM9, A0A654FQZ7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P58223.1

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