U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    glycine-rich protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830027, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    glycine-rich protein
    Primary source
    TAIR:AT4G38710
    Locus tag
    AT4G38710
    See related
    Araport:AT4G38710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9A14.5
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (18077790..18080228, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene PLC-like phosphodiesterases superfamily protein Neighboring gene Disease resistance-responsive (dirigent-like protein) family protein Neighboring gene magnesium transporter, putative (DUF803) Neighboring gene rotamase CYP 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    2. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    3. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    5. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001204027.2
    NM_120032.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables translation initiation factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    glycine-rich protein
    NP_001190956.1
    • glycine-rich protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Plant specific eukaryotic initiation factor 4B (InterPro:IPR010433); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4B1 (TAIR:AT3G26400.1).
    NP_195583.1
    • glycine-rich protein; CONTAINS InterPro DOMAIN/s: Plant specific eukaryotic initiation factor 4B (InterPro:IPR010433); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4B1 (TAIR:AT3G26400.1); Has 13357 Blast hits to 7743 proteins in 694 species: Archae - 46; Bacteria - 1331; Metazoa - 4294; Fungi - 1200; Plants - 649; Viruses - 189; Other Eukaryotes - 5648 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18077790..18080228 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120032.4 → NP_195583.1  glycine-rich protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195583.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JUG0, Q9SZP8
      UniProtKB/TrEMBL
      A0A178UXH0, A0A5S9Y077, A0A654FWS7
      Conserved Domains (2) summary
      PTZ00121
      Location:319 → 451
      PTZ00121; MAEBL; Provisional
      pfam06273
      Location:37 → 343
      eIF-4B; Plant specific eukaryotic initiation factor 4B

    2. NM_001204027.2 → NP_001190956.1  glycine-rich protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190956.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXH0
      Conserved Domains (1) summary
      pfam06273
      Location:35 → 343
      eIF-4B; Plant specific eukaryotic initiation factor 4B
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZP8.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools