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    extensin-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824088, updated on 18-Sep-2024

    Summary

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    Official Full Name
    extensin-like protein
    Primary source
    TAIR:AT3G49270
    Locus tag
    AT3G49270
    See related
    Araport:AT3G49270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (18267149..18268271, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene defective in meristem silencing 3 Neighboring gene IQ-domain 21 Neighboring gene pseudo Neighboring gene ABL interactor-like protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084793.1
    NM_001084794.1
    NM_114786.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    extensin-like protein
    NP_001078262.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G49300.1); Has 63 Blast hits to 43 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    NP_001078263.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G49300.1); Has 61 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    NP_190496.2
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G49300.1); Has 63 Blast hits to 43 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18267149..18268271 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114786.4 → NP_190496.2  extensin-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190496.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IWT5

    2. NM_001084793.1 → NP_001078262.1  extensin-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078262.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IWT5

    3. NM_001084794.1 → NP_001078263.1  extensin-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078263.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRV7
    Nucleotide Protein
    Heading Accession and Version

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