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    RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831688, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNI-like superfamily protein
    Primary source
    TAIR:AT5G01720
    Locus tag
    AT5G01720
    See related
    Araport:AT5G01720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7A7.240; F7A7_240
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (266278..270646, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2C family protein Neighboring gene methyltransferase Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene SCAR family protein 4 Neighboring gene Nuclear transport factor 2 (NTF2) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. F-box protein RAE1 regulates the stability of the aluminum-resistance transcription factor STOP1 in Arabidopsis. Zhang Y, et al. Proc Natl Acad Sci U S A, 2019 Jan 2. PMID 30559192, Free PMC Article
    2. Protein degradation in signaling. Callis J, et al. Curr Opin Plant Biol, 2000 Oct. PMID 11019805
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_120250.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein ubiquitination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNI-like superfamily protein
    NP_568094.2
    • RNI-like superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G27920.1); Has 15959 Blast hits to 6468 proteins in 357 species: Archae - 0; Bacteria - 920; Metazoa - 6194; Fungi - 1434; Plants - 4975; Viruses - 16; Other Eukaryotes - 2420 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      266278..270646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120250.4 → NP_568094.2  RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568094.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LCI1, Q8RWU5, Q9M004
      UniProtKB/TrEMBL
      A0A654FXU2
      Conserved Domains (2) summary
      cd09293
      Location:441 → 567
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:254 → 279
      LRR_AMN1; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RWU5.1

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