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    uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830589, updated on 18-Sep-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT5G06980
    Locus tag
    AT5G06980
    See related
    Araport:AT5G06980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LNK4; MOJ9.15; MOJ9_15; night light-inducible and clock-regulated 4
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (2167120..2169437)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene OCS-element binding factor 5 Neighboring gene plant/protein (DUF810) Neighboring gene MIZU-KUSSEI-like protein (Protein of unknown function, DUF617) Neighboring gene sulfotransferase 2B Neighboring gene sulfotransferase 2A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The LNK Gene Family: At the Crossroad between Light Signaling and the Circadian Clock. de Leone MJ, et al. Genes (Basel), 2018 Dec 20. PMID 30577529, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203316.1
    NM_001203317.1
    NM_001342915.1
    NM_180454.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in circadian rhythm IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within circadian rhythm IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_001190245.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12320.1).
    NP_001190246.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12320.1).
    NP_568176.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_850785.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12320.1); Has 30 Blast hits to 29 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2167120..2169437
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120780.4 → NP_568176.1  uncharacterized protein AT5G06980 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568176.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDB0, A0A5S9Y226

    2. NM_001203317.1 → NP_001190246.1  uncharacterized protein AT5G06980 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190246.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UF64

    3. NM_001203316.1 → NP_001190245.1  uncharacterized protein AT5G06980 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190245.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDB0, A0A5S9Y226

    4. NM_001342915.1 → NP_001330537.1  uncharacterized protein AT5G06980 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDB0, A0A5S9Y226

    5. NM_180454.2 → NP_850785.1  uncharacterized protein AT5G06980 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850785.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K5B1, F4K5B3, F4K5B4, Q94B51, Q9FL48
      UniProtKB/TrEMBL
      A0A178UF64
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FL48.1

    Gene LinkOut

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