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    NIC2 nicotinamidase 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832387, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NIC2
    Official Full Name
    nicotinamidase 2
    Primary source
    TAIR:AT5G23230
    Locus tag
    AT5G23230
    See related
    Araport:AT5G23230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MKD15.9; MKD15_9; nicotinamidase 2
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    Genomic context

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    See NIC2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (7825858..7826611, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Defensin-like (DEFL) family protein Neighboring gene nicotinamidase 3 Neighboring gene ncRNA Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene miscRNA Neighboring gene Succinyl-CoA ligase, alpha subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nicotinamidase activity is important for germination. Hunt L, et al. Plant J, 2007 Aug. PMID 17587307
    2. Interactome analysis reveals versatile functions of Arabidopsis COLD SHOCK DOMAIN PROTEIN 3 in RNA processing within the nucleus and cytoplasm. Kim MH, et al. Cell Stress Chaperones, 2013 Jul. PMID 23334891, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_122229.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nicotinamidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within NAD metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    nicotinamidase 2
    NP_197714.1
    • nicotinamidase 2 (NIC2); CONTAINS InterPro DOMAIN/s: Isochorismatase-like (InterPro:IPR000868); BEST Arabidopsis thaliana protein match is: nicotinamidase 3 (TAIR:AT5G23220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7825858..7826611 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122229.4 → NP_197714.1  nicotinamidase 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197714.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FMX7
      UniProtKB/TrEMBL
      A0A7G2FFV8
      Conserved Domains (1) summary
      PLN02621
      Location:1 → 198
      PLN02621; nicotinamidase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FMX7.1

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