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    transmembrane protein, putative (Protein of unknown function, DUF599) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834336, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (Protein of unknown function, DUF599)
    Primary source
    TAIR:AT5G43180
    Locus tag
    AT5G43180
    See related
    Araport:AT5G43180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K24F5.2; K24F5_2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (17336291..17337884, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene QWRF motif protein (DUF566) Neighboring gene zinc-finger protein 3 Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene uncharacterized protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_123684.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein, putative (Protein of unknown function, DUF599)
    NP_199132.1
    • Protein of unknown function, DUF599; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF599 (TAIR:AT4G31330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17336291..17337884 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123684.6 → NP_199132.1  transmembrane protein, putative (Protein of unknown function, DUF599) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199132.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U768, A0A5S9YAG7, A0A654G825, Q9LUH6
      Conserved Domains (1) summary
      pfam04654
      Location:10 → 232
      DUF599; Protein of unknown function, DUF599
    Nucleotide Protein
    Heading Accession and Version

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