Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Heavy metal transport/detoxification superfamily protein
Primary source: TAIR:AT5G50740
Locus tag: AT5G50740
See related: Araport:AT5G50740
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: MFB16.14; MFB16_14
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 4

Sequence:: Chromosome: 5; NC_003076.8 (20635826..20638104, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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NM_001085273.2

Supported by ESTs:

NM_001125938.2

Supported by ESTs:

NM_001203578.2

Supported by ESTs:

NM_001344907.1

Supported by ESTs:

NM_124452.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	ISM Inferred from Sequence Model more info
located_in plasma membrane	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Heavy metal transport/detoxification superfamily protein

NP_001078742.1

Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: farnesylated protein 3 (TAIR:AT5G63530.2); Has 1407 Blast hits to 1211 proteins in 83 species: Archae - 0; Bacteria - 22; Metazoa - 46; Fungi - 6; Plants - 1219; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).

NP_001119410.1

Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: farnesylated protein 3 (TAIR:AT5G63530.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NP_001190507.1

Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: farnesylated protein 3 (TAIR:AT5G63530.2).

NP_199887.2

Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: farnesylated protein 3 (TAIR:AT5G63530.1); Has 3627 Blast hits to 2265 proteins in 257 species: Archae - 2; Bacteria - 226; Metazoa - 530; Fungi - 59; Plants - 2104; Viruses - 3; Other Eukaryotes - 703 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

20635826..20638104 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001203578.2 → NP_001190507.1 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001190507.1

Status: REVIEWED

UniProtKB/TrEMBL

F4KAE7

Conserved Domains (1) summary

cd00371
Location:42 → 98

HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
NM_001085273.2 → NP_001078742.1 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001078742.1

Status: REVIEWED

UniProtKB/TrEMBL

Q9LUE7

Conserved Domains (1) summary

cd00371
Location:35 → 91

HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
NM_001125938.2 → NP_001119410.1 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001119410.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9YD46, B3H4U8

Conserved Domains (1) summary

cd00371
Location:42 → 98

HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
NM_001344907.1 → NP_001331136.1 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9YD46, F4KAE6

Conserved Domains (1) summary

cd00371
Location:35 → 91

HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
NM_124452.3 → NP_199887.2 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_199887.2

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9YD46, F4KAE6

Conserved Domains (1) summary

cd00371
Location:35 → 91

HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...