LTI78 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: LTI78
Official Full Name: low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
Primary source: TAIR:AT5G52310
Locus tag: AT5G52310
See related: Araport:AT5G52310
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: COLD REGULATED 78; COR78; K24M7.4; K24M7_4; LOW-TEMPERATURE-INDUCED 78; LTI140; RD29A; RESPONSIVE TO DESSICATION 29A
Summary: cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression
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Genomic context

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See LTI78 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 4

Sequence:: Chromosome: 5; NC_003076.8 (21240717..21243644)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

dynamics of Response-to-Dehydration 29A (RD29A) expression induced by single or combined sodium chloride and abscissic acid treatments in Arabidopsis thaliana, was examined.
Title: Synergistic Activation of RD29A Via Integration of Salinity Stress and Abscisic Acid in Arabidopsis thaliana.
desiccation-responsive rd29A gene in Arabidopsis thaliana
Title: Bioinformatical evaluation of desiccation-responsive rd29A gene in Arabidopsis thaliana.
Data indicate that WRKY8 interacts with VQ9 (At1g78310) in the nucleus of plant cells, and binds the promoter of RD29A (AT5G52310), in vivo.
Title: Arabidopsis transcription factor WRKY8 functions antagonistically with its interacting partner VQ9 to modulate salinity stress tolerance.
Data indicate that both RD29A and RD29B promoters were significantly activated in soybean plants subjected to dry-down conditions.
Title: Activity of the Arabidopsis RD29A and RD29B promoter elements in soybean under water stress.
CRLK1 interacts with MEKK1 in vitro and in planta during cold treatment.
Title: Calcium/calmodulin-regulated receptor-like kinase CRLK1 interacts with MEKK1 in plants.
expression enhanced by spermine, making it the polyamine responsible for salt acclimation
Title: Homeostatic control of polyamine levels under long-term salt stress in Arabidopsis: changes in putrescine content do not alleviate ionic toxicity.
These results indicate that CRLK1 is a positive regulator of cold tolerance in plants, and suggest that CRLK1 plays a role in bridging calcium/calmodulin signaling and cold signaling [CRLK1].
Title: A calcium/calmodulin-regulated member of the receptor-like kinase family confers cold tolerance in plants.
Data show that increase in expression expression of the cold response genes, COR15A, RD29A, and CBF3, resulting in enhanced tolerance to freezing temperatures.
Title: Lipophilic components of the brown seaweed, Ascophyllum nodosum, enhance freezing tolerance in Arabidopsis thaliana.
The freezing tolerance of 38 independent transgenic potato lines was tested in vitro using plantlets transgenic for the DREB1A gene under control of the rd29A promoter.
Title: Arabidopsis rd29A::DREB1A enhances freezing tolerance in transgenic potato.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_124610.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in circadian rhythm	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within hyperosmotic salinity response	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within leaf senescence	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of root development	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within response to abscisic acid	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to abscisic acid	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within response to cold	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to cold	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within response to desiccation	IMP Inferred from Mutant Phenotype more info
involved_in response to mannitol	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within response to osmotic stress	IGI Inferred from Genetic Interaction more info	PubMed
involved_in response to reactive oxygen species	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to salt	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within response to salt stress	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to salt stress	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to symbiotic bacterium	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within response to water deprivation	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to water deprivation	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to wounding	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IDA Inferred from Direct Assay more info	PubMed
located_in cytosol	HDA more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info
located_in plastid	HDA more info	PubMed

General protein information

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Preferred Names: low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)

NP_200044.1

LOW-TEMPERATURE-INDUCED 78 (LTI78); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.2); Has 4951 Blast hits to 3145 proteins in 397 species: Archae - 10; Bacteria - 1464; Metazoa - 1621; Fungi - 447; Plants - 293; Viruses - 46; Other Eukaryotes - 1070 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

21240717..21243644

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_124610.3 → NP_200044.1 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_200044.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q04981, Q06738, Q39060, Q56Y03, Q93Y41

UniProtKB/TrEMBL

A0A178UHZ9, A0A5S9YDB6

Conserved Domains (1) summary

PLN03021
Location:2 → 703

PLN03021; Low-temperature-induced protein; Provisional