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    VLN5 actin filament bundling protein P-115-ABP protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835837, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VLN5
    Official Full Name
    actin filament bundling protein P-115-ABP protein
    Primary source
    TAIR:AT5G57320
    Locus tag
    AT5G57320
    See related
    Araport:AT5G57320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MJB24.13; MJB24_13; villin 5
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    Genomic context

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    See VLN5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    24
    Sequence:
    Chromosome: 5; NC_003076.8 (23211952..23218041)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 60S acidic ribosomal protein family Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Galactose mutarotase-like superfamily protein Neighboring gene ras guanine nucleotide exchange factor Q-like protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis VILLIN5, an actin filament bundling and severing protein, is necessary for normal pollen tube growth. Zhang H, et al. Plant Cell, 2010 Aug. PMID 20807879, Free PMC Article
    2. Arabidopsis villins promote actin turnover at pollen tube tips and facilitate the construction of actin collars. Qu X, et al. Plant Cell, 2013 May. PMID 23715472, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data indicate that the construction of actin collars was affected in vln2 vln5 double mutantpollen tubes.
      Title: Arabidopsis villins promote actin turnover at pollen tube tips and facilitate the construction of actin collars.
    2. VLN5 is a major actin filament stabilizing factor as well as a regulator of actin dynamics that functions in concert with oscillatory Ca2+ gradients and regulates pollen tube growth.
      Title: Arabidopsis VILLIN5, an actin filament bundling and severing protein, is necessary for normal pollen tube growth.
    Submit: New GeneRIF Correction

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    actin filament bundling protein P-115-ABP protein
    NP_001318818.1
    • villin, putative; FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: villin 4 (TAIR:AT4G30160.1); Has 3179 Blast hits to 2033 proteins in 206 species: Archae - 0; Bacteria - 16; Metazoa - 2271; Fungi - 140; Plants - 219; Viruses - 0; Other Eukaryotes - 533 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23211952..23218041
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345257.1 → NP_001332290.1  actin filament bundling protein P-115-ABP protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVC6
      UniProtKB/TrEMBL
      A0A178UE99

    2. NM_001345256.1 → NP_001318818.1  actin filament bundling protein P-115-ABP protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVC6
      UniProtKB/TrEMBL
      A0A178UE99
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVC6.1

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