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    Cand8 Protein of unknown function, transmembrane-40 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832779, updated on 18-Sep-2024

    Summary

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    Official Symbol
    Cand8
    Official Full Name
    Protein of unknown function, transmembrane-40
    Primary source
    TAIR:AT5G27210
    Locus tag
    AT5G27210
    See related
    Araport:AT5G27210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    candidate G-protein Coupled Receptor 8; T21B4.120; T21B4_120
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    Genomic context

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    See Cand8 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (9572066..9574135, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene acyl carrier protein 5 Neighboring gene Frigida-like protein Neighboring gene Frigida-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Whole proteome identification of plant candidate G-protein coupled receptors in Arabidopsis, rice, and poplar: computational prediction and in-vivo protein coupling. Gookin TE, et al. Genome Biol, 2008. PMID 18671868, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_122603.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Protein of unknown function, transmembrane-40
    NP_198073.1
    • Protein of unknown function, transmembrane-40; CONTAINS InterPro DOMAIN/s: Protein of unknown function, transmembrane-40 (InterPro:IPR018781); BEST Arabidopsis thaliana protein match is: Protein of unknown function, transmembrane-40 (TAIR:AT3G05010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9572066..9574135 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122603.2 → NP_198073.1  Protein of unknown function, transmembrane-40 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198073.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K2U8, O04651, Q8L8S4, Q94BV6
      UniProtKB/TrEMBL
      A0A178UGN2, A0A5S9Y7P2, A0A654G4T6
      Conserved Domains (1) summary
      pfam10160
      Location:30 → 284
      Tmemb_40; Predicted membrane protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4K2U8.1

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