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    Plant invertase/pectin methylesterase inhibitor superfamily [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832850, updated on 18-Sep-2024

    Summary

    Official Full Name
    Plant invertase/pectin methylesterase inhibitor superfamily
    Primary source
    TAIR:AT5G27870
    Locus tag
    AT5G27870
    See related
    Araport:AT5G27870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14I23.30; F14I23_30
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    Genomic context

    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (9878689..9881848, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Ribosomal protein L18e/L15 superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene C2H2 and C2HC zinc fingers superfamily protein Neighboring gene pseudo

    Pathways from PubChem

    General gene information

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables enzyme inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in pectin catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Plant invertase/pectin methylesterase inhibitor superfamily
    NP_198139.1
    • Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT3G05610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9878689..9881848 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122669.2NP_198139.1  Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198139.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3E8Z8
      UniProtKB/TrEMBL
      A0A5S9Y854
      Conserved Domains (4) summary
      PLN02217
      Location:1681
      PLN02217; probable pectinesterase/pectinesterase inhibitor
      cd15798
      Location:60210
      PMEI-like_3; Uncharacterized subfamily of plant invertase/pectin methylesterase inhibitor domains
      pfam01095
      Location:252548
      Pectinesterase; Pectinesterase
      pfam15336
      Location:561679
      Auts2; Autism susceptibility gene 2 protein