U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831357, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
    Primary source
    TAIR:AT5G15050
    Locus tag
    AT5G15050
    See related
    Araport:AT5G15050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2G14.170; F2G14_170; GlcA transferase 14B; GlcAT14B
    Summary
    Encodes GlcAT14B. Has glucuronosyltransferase activity adding glucuronic acid residues to beta-1,3- and beta-1,6-linked galactans.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (4871531..4873683, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene paired amphipathic helix Sin3-like protein Neighboring gene Paired amphipathic helix (PAH2) superfamily protein Neighboring gene Lateral organ boundaries (LOB) domain family protein Neighboring gene Phosphoglycerate mutase-like family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis thaliana glucuronosyltransferase in family GT14. Dilokpimol A, et al. Plant Signal Behav, 2014. PMID 24739253, Free PMC Article
    2. Elucidating the roles of three β-glucuronosyltransferases (GLCATs) acting on arabinogalactan-proteins using a CRISPR-Cas9 multiplexing approach in Arabidopsis. Zhang Y, et al. BMC Plant Biol, 2020 May 18. PMID 32423474, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Elucidating the roles of three beta-glucuronosyltransferases (GLCATs) acting on arabinogalactan-proteins using a CRISPR-Cas9 multiplexing approach in Arabidopsis.
      Title: Elucidating the roles of three β-glucuronosyltransferases (GLCATs) acting on arabinogalactan-proteins using a CRISPR-Cas9 multiplexing approach in Arabidopsis.
    2. At5g15050 and At2g37585 both possess glucuronosyltransferase activity
      Title: Arabidopsis thaliana glucuronosyltransferase in family GT14.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help
    NM_121509.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glucuronosyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
    NP_197009.1
    • Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G39990.1); Has 926 Blast hits to 925 proteins in 118 species: Archae - 0; Bacteria - 49; Metazoa - 525; Fungi - 0; Plants - 316; Viruses - 14; Other Eukaryotes - 22 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4871531..4873683 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121509.3 → NP_197009.1  Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197009.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LFQ0
      UniProtKB/TrEMBL
      A0A178U983, A0A5S9Y4U0
      Conserved Domains (1) summary
      cl27418
      Location:18 → 434
      Branch; Core-2/I-Branching enzyme
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LFQ0.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools