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    EM1 Stress induced protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824344, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EM1
    Official Full Name
    Stress induced protein
    Primary source
    TAIR:AT3G51810
    Locus tag
    AT3G51810
    See related
    Araport:AT3G51810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1; AT3; ATEM1; EM1 PROTEIN; GEA1; GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1; LATE EMBRYOGENESIS ABUNDANT 1
    Summary
    Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip.
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    Genomic context

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    See EM1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (19214722..19215831)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene transmembrane protein G1P-related 1 Neighboring gene metallopeptidase M24 family protein Neighboring gene ncRNA Neighboring gene UbiA prenyltransferase family protein Neighboring gene SAC domain-containing protein 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two different Em-like genes are expressed in Arabidopsis thaliana seeds during maturation. Gaubier P, et al. Mol Gen Genet, 1993 Apr. PMID 8492809
    2. 14-3-3 Proteins are components of the transcription complex of the ATEM1 promoter in Arabidopsis. del Viso F, et al. Planta, 2007 Dec. PMID 17701425
    3. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001339533.1
    NM_115040.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy TAS
    Traceable Author Statement
    more info
    		  
    acts_upstream_of_or_within response to abscisic acid TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Stress induced protein
    NP_190749.1
    • LATE EMBRYOGENESIS ABUNDANT 1 (EM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to abscisic acid stimulus, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, seed; EXPRESSED DURING: dry seed stage, seedling growth, seed maturation stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 5, conserved site (InterPro:IPR022377), Stress induced protein (InterPro:IPR000389); BEST Arabidopsis thaliana protein match is: Stress induced protein (TAIR:AT2G40170.1); Has 1194 Blast hits to 542 proteins in 139 species: Archae - 84; Bacteria - 323; Metazoa - 232; Fungi - 23; Plants - 322; Viruses - 14; Other Eukaryotes - 196 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19214722..19215831
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115040.3 → NP_190749.1  Stress induced protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190749.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q07187
      UniProtKB/TrEMBL
      A0A178V532, A0A5S9XJY4, A0A654FEY7
      Conserved Domains (1) summary
      pfam00477
      Location:1 → 149
      LEA_5; Small hydrophilic plant seed protein

    2. NM_001339533.1 → NP_001326558.1  Stress induced protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q42489
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q07187.1

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