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    ipcef1 interaction protein for cytohesin exchange factors 1 [ Danio rerio (zebrafish) ]

    Gene ID: 767791, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ipcef1provided by ZNC
    Official Full Name
    interaction protein for cytohesin exchange factors 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060929-172
    See related
    Ensembl:ENSDARG00000099252 AllianceGenome:ZFIN:ZDB-GENE-060929-172
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:154018
    Summary
    Orthologous to human IPCEF1 (interaction protein for cytohesin exchange factors 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ipcef1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (4221978..4248785)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (4505901..4513710)
    105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_008805360.1 (1141..18041, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene 40S small subunit processome assembly factor 1 Neighboring gene glyceronephosphate O-acyltransferase Neighboring gene rho guanine nucleotide exchange factor TIAM2 Neighboring gene uncharacterized LOC137488609 Neighboring gene claudin-20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC154018

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    interactor protein for cytohesin exchange factors 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076758.1 → NP_001070226.1  interactor protein for cytohesin exchange factors 1

      See identical proteins and their annotated locations for NP_001070226.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124514
      UniProtKB/TrEMBL
      A0A8M9PHJ9, Q08BX7
      Related
      ENSDARP00000133499.2, ENSDART00000171898.2
      Conserved Domains (2) summary
      cd01260
      Location:2 → 115
      PH_CNK_mammalian-like; Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain
      pfam00169
      Location:16 → 111
      PH; PH domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      4221978..4248785
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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