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    rrbp1a ribosome binding protein 1a [ Danio rerio (zebrafish) ]

    Gene ID: 553448, updated on 4-Jan-2025

    Summary

    Official Symbol
    rrbp1aprovided by ZNC
    Official Full Name
    ribosome binding protein 1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-9795
    See related
    Ensembl:ENSDARG00000013763 AllianceGenome:ZFIN:ZDB-GENE-030131-9795
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cb360; sb:cb360; wu:fa66b07; wu:fb58g03; zgc:171356; si:dkey-76k16.7
    Summary
    Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including anterior axial hypoblast; axial mesoderm; axis; cardiovascular system; and hatching gland. Orthologous to human RRBP1 (ribosome binding protein 1). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
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    Genomic context

    See rrbp1a in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (33611698..33639050, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (33502162..33529505, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137487421 Neighboring gene cofilin 1 (non-muscle), like Neighboring gene si:dkey-76k16.6 Neighboring gene sorting nexin 5 Neighboring gene mitochondrial genome maintenance exonuclease 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Clone Names

    • MGC171356

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in endoplasmic reticulum  
    is_active_in endoplasmic reticulum membrane  
    located_in endoplasmic reticulum membrane  
    located_in membrane  

    General protein information

    Preferred Names
    ribosome-binding protein 1a
    Names
    ribosome binding protein 1 homolog a (dog)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145555.1 → NP_001139027.1  ribosome-binding protein 1a

      Status: PROVISIONAL

      Source sequence(s)
      BX005372
      UniProtKB/TrEMBL
      A0A8M1NQ07, B8A4D7
      Related
      ENSDARP00000118039.1, ENSDART00000133073.2
      Conserved Domains (5) summary
      pfam04554
      Location:179 → 220
      Extensin_2; Extensin-like region
      pfam05104
      Location:33 → 210
      Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region
      pfam13851
      Location:708 → 885
      GAS; Growth-arrest specific micro-tubule binding
      pfam15035
      Location:1049 → 1186
      Rootletin; Ciliary rootlet component, centrosome cohesion
      cl19252
      Location:623 → 683
      MreC; rod shape-determining protein MreC

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      33611698..33639050 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005156963.5 → XP_005157020.1  ribosome-binding protein 1a isoform X1

      UniProtKB/TrEMBL
      A0A8M2B3S2
      Conserved Domains (5) summary
      pfam04554
      Location:179 → 220
      Extensin_2; Extensin-like region
      pfam05104
      Location:33 → 210
      Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region
      pfam13851
      Location:708 → 882
      GAS; Growth-arrest specific micro-tubule binding
      pfam15035
      Location:1046 → 1183
      Rootletin; Ciliary rootlet component, centrosome cohesion
      cl19252
      Location:623 → 683
      MreC; rod shape-determining protein MreC
    2. XM_005156964.5 → XP_005157021.1  ribosome-binding protein 1a isoform X2

      UniProtKB/TrEMBL
      A0A8M2B316
      Conserved Domains (5) summary
      pfam04554
      Location:179 → 220
      Extensin_2; Extensin-like region
      pfam05104
      Location:33 → 210
      Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region
      pfam13851
      Location:708 → 885
      GAS; Growth-arrest specific micro-tubule binding
      pfam15035
      Location:1049 → 1186
      Rootletin; Ciliary rootlet component, centrosome cohesion
      cl19252
      Location:623 → 683
      MreC; rod shape-determining protein MreC

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