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    si:ch73-111k22.2 si:ch73-111k22.2 [ Danio rerio (zebrafish) ]

    Gene ID: 568408, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch73-111k22.2provided by ZNC
    Official Full Name
    si:ch73-111k22.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5221
    See related
    Ensembl:ENSDARG00000043842 AllianceGenome:ZFIN:ZDB-GENE-030131-5221
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fa18f11; wu:fa18f11
    Summary
    Orthologous to human C1orf198 (chromosome 1 open reading frame 198). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See si:ch73-111k22.2 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (3916406..3927624)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (4104274..4115492, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene cnksr family member 3 Neighboring gene si:ch73-111k22.3 Neighboring gene C-type lectin domain containing 11A Neighboring gene selenoprotein L

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C1orf198 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001201453.2 → NP_001188382.1  uncharacterized protein C1orf198 homolog

      Status: VALIDATED

      Source sequence(s)
      CU929133, EH485217, EH507115, EH566821
      UniProtKB/Swiss-Prot
      Q4KMC9
      UniProtKB/TrEMBL
      A0A8M1P1P3, F1QWI0
      Related
      ENSDARP00000064364.5, ENSDART00000064365.7
      Conserved Domains (1) summary
      pfam15797
      Location:22 → 124
      DUF4706; Domain of unknown function (DUF4706)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      3916406..3927624
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4KMC9.2 GenPept UniProtKB/Swiss-Prot:Q4KMC9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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