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    ankrd13c ankyrin repeat domain 13C [ Danio rerio (zebrafish) ]

    Gene ID: 325167, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ankrd13cprovided by ZNC
    Official Full Name
    ankyrin repeat domain 13Cprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3892
    See related
    Ensembl:ENSDARG00000103831 AllianceGenome:ZFIN:ZDB-GENE-030131-3892
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc57c01; zgc:56077; wu:fc57c01; wu:fq56c05
    Summary
    Predicted to enable signaling receptor binding activity. Predicted to be involved in protein retention in ER lumen. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in cytoplasm. Orthologous to human ANKRD13C (ankyrin repeat domain 13C). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ankrd13c in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (45402525..45420334, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (45024959..45042768, complement)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 10 Neighboring gene serine and arginine rich splicing factor 11 Neighboring gene son of sevenless homolog 1 (Drosophila) Neighboring gene phospholipase A and acyltransferase 1 Neighboring gene replication factor C (activator 1) 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables signaling receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein retention in ER lumen IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein 13C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214690.1 → NP_999855.1  ankyrin repeat domain-containing protein 13C

      See identical proteins and their annotated locations for NP_999855.1

      Status: PROVISIONAL

      Source sequence(s)
      BC047821
      UniProtKB/Swiss-Prot
      Q7ZUV0
      Related
      ENSDARP00000137866.1, ENSDART00000163185.3
      Conserved Domains (4) summary
      cd00204
      Location:56 → 146
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam11904
      Location:206 → 479
      GPCR_chapero_1; GPCR-chaperone
      pfam13637
      Location:91 → 144
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:58 → 88
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      45402525..45420334 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7ZUV0.1 GenPept UniProtKB/Swiss-Prot:Q7ZUV0

    Gene LinkOut

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