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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001172370.2 → NP_001165841.2 collagen, type XV, alpha 1b precursor
See identical proteins and their annotated locations for NP_001165841.2
Status: PROVISIONAL
- Source sequence(s)
-
FN432724
- UniProtKB/TrEMBL
-
D3GN36
- Related
- ENSDARP00000122740.2, ENSDART00000137065.4
- Conserved Domains (3) summary
-
- pfam01391
Location:697 → 743
- Collagen; Collagen triple helix repeat (20 copies)
- cd00247
Location:992 → 1161
- Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
- cl22861
Location:43 → 222
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCz11 Primary Assembly
Genomic
-
NC_007113.7 Reference GRCz11 Primary Assembly
- Range
-
23937068..24013234 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017358519.3 → XP_017214008.1 collagen, type XV, alpha 1b isoform X5
- UniProtKB/TrEMBL
-
A0A8M6Z1E7
- Related
- ENSDARP00000083076.6, ENSDART00000088643.6
-
XM_005171235.5 → XP_005171292.1 collagen, type XV, alpha 1b isoform X4
- UniProtKB/TrEMBL
-
A0A8M2BIM9
- Conserved Domains (3) summary
-
- pfam01391
Location:490 → 544
- Collagen; Collagen triple helix repeat (20 copies)
- cd00247
Location:1082 → 1251
- Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
- cl22861
Location:43 → 222
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_009298514.4 → XP_009296789.1 collagen, type XV, alpha 1b isoform X2
- UniProtKB/TrEMBL
-
A0A8M3B7P8
- Conserved Domains (3) summary
-
- pfam01391
Location:546 → 600
- Collagen; Collagen triple helix repeat (20 copies)
- cd00247
Location:1126 → 1295
- Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
- cl22861
Location:99 → 278
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_005171234.5 → XP_005171291.1 collagen, type XV, alpha 1b isoform X3
- UniProtKB/TrEMBL
-
A0A8M2BII4
- Conserved Domains (3) summary
-
- pfam01391
Location:546 → 600
- Collagen; Collagen triple helix repeat (20 copies)
- cd00247
Location:1124 → 1293
- Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
- cl22861
Location:99 → 278
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_009298513.4 → XP_009296788.1 collagen, type XV, alpha 1b isoform X1
- UniProtKB/TrEMBL
-
A0A8M3APP4
- Conserved Domains (3) summary
-
- pfam01391
Location:546 → 600
- Collagen; Collagen triple helix repeat (20 copies)
- cd00247
Location:1138 → 1307
- Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
- cl22861
Location:99 → 278
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...