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    si:ch211-163b2.4 si:ch211-163b2.4 [ Danio rerio (zebrafish) ]

    Gene ID: 100003064, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-163b2.4provided by ZNC
    Official Full Name
    si:ch211-163b2.4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081104-502
    See related
    Ensembl:ENSDARG00000094890 AllianceGenome:ZFIN:ZDB-GENE-081104-502
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable microtubule binding activity. Predicted to be active in nucleus. Predicted to colocalize with cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See si:ch211-163b2.4 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (45003627..45010560)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (45009540..45016652)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene zgc:154046 Neighboring gene translocase of inner mitochondrial membrane 17 homolog B (yeast) Neighboring gene si:ch211-163b2.2 Neighboring gene uncharacterized LOC137496304

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables microtubule binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    colocalizes_with cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100003064

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113648.1 → NP_001107120.1  uncharacterized protein LOC100003064

      Status: PREDICTED

      Source sequence(s)
      BX005065
      UniProtKB/TrEMBL
      A0A8M1NFV5, A8WHM9
      Related
      ENSDARP00000120066.1, ENSDART00000132663.3

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      45003627..45010560
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068222834.1 → XP_068078935.1  uncharacterized protein LOC100003064 isoform X1

      UniProtKB/TrEMBL
      A0A8M1NFV5, A8WHM9
      Related
      ENSDARP00000130429.1, ENSDART00000159779.2

    2. XM_068222835.1 → XP_068078936.1  uncharacterized protein LOC100003064 isoform X1

      UniProtKB/TrEMBL
      A0A8M1NFV5, A8WHM9

    3. XM_017357263.3 → XP_017212752.1  uncharacterized protein LOC100003064 isoform X1

      UniProtKB/TrEMBL
      A0A8M1NFV5, A8WHM9
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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