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    rps18 ribosomal protein S18 [ Danio rerio (zebrafish) ]

    Gene ID: 192300, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rps18provided by ZNC
    Official Full Name
    ribosomal protein S18provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-020419-20
    See related
    Ensembl:ENSDARG00000100392 AllianceGenome:ZFIN:ZDB-GENE-020419-20
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ke3; chunp6895
    Summary
    Predicted to enable rRNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within regulation of cell cycle. Predicted to be located in cytoplasm and ribosome. Predicted to be part of small ribosomal subunit. Predicted to be active in cytosol. Orthologous to human RPS18 (ribosomal protein S18). [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See rps18 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (18617755..18626995, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (19154904..19163661, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene prolyl 3-hydroxylase family member 4 (inactive) Neighboring gene FKBP prolyl isomerase 10a Neighboring gene uncharacterized LOC103909220 Neighboring gene VPS52 subunit of GARP complex Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 1, like 3 Neighboring gene uncharacterized LOC568019

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. 40S ribosomal protein S18 is a novel maternal peptidoglycan-binding protein that protects embryos of zebrafish from bacterial infections. Wang X, et al. Dev Comp Immunol, 2021 Dec. PMID 34310970
    2. Does a ghrelin stimulus during zebrafish embryonic stage modulate its performance on the long-term? Navarro-Guillén C, et al. Comp Biochem Physiol A Mol Integr Physiol, 2019 Feb. PMID 30393112
    3. Neuronal subtypes are specified by the level of neurod expression in the zebrafish lateral line. Sato A, et al. J Neurosci, 2013 Jan 9. PMID 23303935, Free PMC Article
    4. Physiological Responses to Swimming-Induced Exercise in the Adult Zebrafish Regenerating Heart. Rovira M, et al. Front Physiol, 2018. PMID 30327615, Free PMC Article
    5. Differential DNA methylation at conserved non-genic elements and evidence for transgenerational inheritance following developmental exposure to mono(2-ethylhexyl) phthalate and 5-azacytidine in zebrafish. Kamstra JH, et al. Epigenetics Chromatin, 2017. PMID 28413451, Free PMC Article

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of cell cycle IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    small ribosomal subunit protein uS13
    Names
    40S ribosomal protein S18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423550.1 → NP_001410479.1  small ribosomal subunit protein uS13

      Status: VALIDATED

      Source sequence(s)
      FP085400
      UniProtKB/Swiss-Prot
      Q8JGS9, Q9IAC0
      UniProtKB/TrEMBL
      A3KQW5
      Related
      ENSDARP00000133054.1, ENSDART00000167971.2

    2. NM_173234.1 → NP_775341.1  small ribosomal subunit protein uS13

      See identical proteins and their annotated locations for NP_775341.1

      Status: PROVISIONAL

      Source sequence(s)
      AY099517
      UniProtKB/Swiss-Prot
      Q8JGS9, Q9IAC0
      UniProtKB/TrEMBL
      A3KQW5
      Conserved Domains (1) summary
      PTZ00134
      Location:1 → 152
      PTZ00134; 40S ribosomal protein S18; Provisional

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      18617755..18626995 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8JGS9.1 GenPept UniProtKB/Swiss-Prot:Q8JGS9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.