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    ncs1b neuronal calcium sensor 1b [ Danio rerio (zebrafish) ]

    Gene ID: 553174, updated on 9-Dec-2024

    Summary

    Official Symbol
    ncs1bprovided by ZNC
    Official Full Name
    neuronal calcium sensor 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050930-1
    See related
    Ensembl:ENSDARG00000054186 AllianceGenome:ZFIN:ZDB-GENE-050930-1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    freqb; fa55b03; wu:fa55b03
    Summary
    Predicted to enable calcium ion binding activity and calcium sensitive guanylate cyclase activator activity. Predicted to be involved in regulation of signal transduction. Predicted to be located in postsynaptic density. Is expressed in diencephalon; hindbrain; peripheral olfactory organ; and telencephalon. Orthologous to human NCS1 (neuronal calcium sensor 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See ncs1b in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (32516160..32599855)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (32506928..32590623)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene si:dkey-164f24.2 Neighboring gene Rieske domain-containing protein Neighboring gene uncharacterized LOC101882414 Neighboring gene hemicentin 2 Neighboring gene zgc:194839

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables calcium ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables calcium sensitive guanylate cyclase activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in postsynaptic density IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    neuronal calcium sensor 1b
    Names
    frequenin homolog b
    ncs-1b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001020514.2NP_001018350.1  neuronal calcium sensor 1b

      See identical proteins and their annotated locations for NP_001018350.1

      Status: PROVISIONAL

      Source sequence(s)
      BC116500
      UniProtKB/TrEMBL
      Q1JQ35, Q53A16
      Related
      ENSDARP00000061785.5, ENSDART00000061786.6
      Conserved Domains (1) summary
      COG5126
      Location:20179
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      32516160..32599855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)