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    ppargc1b peroxisome proliferator-activated receptor gamma, coactivator 1 beta [ Danio rerio (zebrafish) ]

    Gene ID: 555906, updated on 9-Dec-2024

    Summary

    Official Symbol
    ppargc1bprovided by ZNC
    Official Full Name
    peroxisome proliferator-activated receptor gamma, coactivator 1 betaprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030616-43
    See related
    Ensembl:ENSDARG00000101569 AllianceGenome:ZFIN:ZDB-GENE-030616-43
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    PERC; perc1b; fb55c08; sb:cb520; wu:fb55c08; si:bz1d10.4
    Summary
    Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in energy homeostasis and positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including cardiovascular system; cranial ganglion; immature eye; male organism; and retina. Human ortholog(s) of this gene implicated in obesity. Orthologous to human PPARGC1B (PPARG coactivator 1 beta). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See ppargc1b in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (24935115..24997516)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (24637858..24703338)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene slit homolog 3 (Drosophila) Neighboring gene microRNA 218a-1 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 37 Neighboring gene phosphodiesterase 6A, cGMP-specific, rod, alpha Neighboring gene transmembrane protein 216

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    peroxisome proliferator-activated receptor gamma coactivator 1-beta
    Names
    peroxisome proliferative activated receptor, gamma, coactivator 1, beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      24935115..24997516
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009291061.4XP_009289336.1  peroxisome proliferator-activated receptor gamma coactivator 1-beta

      UniProtKB/TrEMBL
      A0A8M3AP47
      Related
      ENSDARP00000132754.1, ENSDART00000170871.2
      Conserved Domains (1) summary
      cl17169
      Location:737823
      RRM_SF; RNA recognition motif (RRM) superfamily