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    rnf38 ring finger protein 38 [ Danio rerio (zebrafish) ]

    Gene ID: 566820, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rnf38provided by ZNC
    Official Full Name
    ring finger protein 38provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8693
    See related
    Ensembl:ENSDARG00000062055 AllianceGenome:ZFIN:ZDB-GENE-030131-8693
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fa94e11; wu:fa94e11; si:dkey-20n3.1
    Summary
    Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Orthologous to human RNF38 (ring finger protein 38). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See rnf38 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (18863095..18937045)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (18170123..18244110)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100535985 Neighboring gene zgc:195282 Neighboring gene uncharacterized LOC101886347 Neighboring gene uncharacterized LOC137495484

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Metabolic regulation and antihyperglycemic properties of diet-derived PGG through transcriptomic and metabolomic profiling. Zhang AN, et al. Food Funct, 2023 Jun 19. PMID 37232296
    2. Rmrp Mutation Disrupts Chondrogenesis and Bone Ossification in Zebrafish Model of Cartilage-Hair Hypoplasia via Enhanced Wnt/β-Catenin Signaling. Sun X, et al. J Bone Miner Res, 2019 Nov. PMID 31237961
    3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RING finger protein 38; E3 ubiquitin-protein ligase RNF38

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      18863095..18937045
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_690108.9 → XP_695200.4  E3 ubiquitin-protein ligase RNF38

      UniProtKB/TrEMBL
      A0A8M9QE71, A0A8N7TDP5, E7FDX7
      Related
      ENSDARP00000113766.1, ENSDART00000139241.2
      Conserved Domains (1) summary
      pfam13639
      Location:621 → 662
      zf-RING_2; Ring finger domain
    Nucleotide Protein Strain
    Heading Accession and Version

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