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    si:dkey-117n7.5 si:dkey-117n7.5 [ Danio rerio (zebrafish) ]

    Gene ID: 559444, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:dkey-117n7.5provided by ZNC
    Official Full Name
    si:dkey-117n7.5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060503-331
    See related
    Ensembl:ENSDARG00000089640 AllianceGenome:ZFIN:ZDB-GENE-060503-331
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable receptor antagonist activity and transforming growth factor beta binding activity. Predicted to be involved in transforming growth factor beta receptor signaling pathway. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-117n7.5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (15963158..15975197)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (15969728..15976155)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene leucine-rich repeats and guanylate kinase domain containing Neighboring gene collagen type VII alpha 1-like Neighboring gene urocortin 3, like Neighboring gene COPI coat complex subunit gamma 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC559444

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044894.1 → NP_001038359.1  uncharacterized protein LOC559444

      Status: PREDICTED

      Source sequence(s)
      BX004864
      UniProtKB/TrEMBL
      A0A8M1N9I2, Q1LYP0
      Related
      ENSDARP00000092348.4, ENSDART00000101575.5
      Conserved Domains (1) summary
      pfam00014
      Location:113 → 163
      Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      15963158..15975197
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068219657.1 → XP_068075758.1  uncharacterized protein LOC559444 isoform X1

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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