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    wu:fc38h03 wu:fc38h03 [ Danio rerio (zebrafish) ]

    Gene ID: 100003644, updated on 4-Jan-2025

    Summary

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    Official Symbol
    wu:fc38h03provided by ZNC
    Official Full Name
    wu:fc38h03provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3430
    See related
    Ensembl:ENSDARG00000074216 AllianceGenome:ZFIN:ZDB-GENE-030131-3430
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc38h03
    Summary
    Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 5. Orthologous to human COLQ (collagen like tail subunit of asymmetric acetylcholinesterase). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    all
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    Genomic context

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    See wu:fc38h03 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (19412933..19436366)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (19839946..19863415)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene KAT8 regulatory NSL complex subunit 1 Neighboring gene asteroid homolog 1b Neighboring gene WAS/WASL interacting protein family member 3 Neighboring gene uncharacterized LOC100535067

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The ATPase-dependent chaperoning activity of Hsp90a regulates thick filament formation and integration during skeletal muscle myofibrillogenesis. Hawkins TA, et al. Development, 2008 Mar. PMID 18256191, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    acetylcholinesterase collagenic tail peptide

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      19412933..19436366
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001343109.9 → XP_001343145.4  acetylcholinesterase collagenic tail peptide

      UniProtKB/TrEMBL
      A0A8M1Q7R8
      Related
      ENSDARP00000100904.3, ENSDART00000113580.4
      Conserved Domains (2) summary
      pfam01391
      Location:136 → 195
      Collagen; Collagen triple helix repeat (20 copies)
      pfam13948
      Location:374 → 402
      DUF4215; Domain of unknown function (DUF4215)
    Nucleotide Protein
    Heading Accession and Version

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