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    zgc:171459 zgc:171459 [ Danio rerio (zebrafish) ]

    Gene ID: 562056, updated on 9-Dec-2024

    Summary

    Official Symbol
    zgc:171459provided by ZNC
    Official Full Name
    zgc:171459provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-2059
    See related
    Ensembl:ENSDARG00000077248 AllianceGenome:ZFIN:ZDB-GENE-030131-2059
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb95f07; wu:fb95f07
    Summary
    Predicted to be involved in cytoplasmic sequestering of protein. Predicted to be active in cytoskeleton. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See zgc:171459 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (19666621..19668183)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (19568670..19570232)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene G-2 and S-phase expressed 1 Neighboring gene ATPase plasma membrane Ca2+ transporting 1b Neighboring gene zgc:113426 Neighboring gene myxovirus (influenza virus) resistance H

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in cytoplasmic sequestering of protein IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC562056

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111165.1NP_001104635.1  uncharacterized protein LOC562056

      See identical proteins and their annotated locations for NP_001104635.1

      Status: PREDICTED

      Source sequence(s)
      BC153929
      UniProtKB/TrEMBL
      A8KB19
      Related
      ENSDARP00000103275.2, ENSDART00000112746.4
      Conserved Domains (1) summary
      cl23759
      Location:2197
      GT1; GT1, myb-like, SANT family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      19666621..19668183
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)