eloa elongin A [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: eloaprovided by ZNC
Official Full Name: elongin Aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2810
See related: Ensembl:ENSDARG00000102365 AllianceGenome:ZFIN:ZDB-GENE-040426-2810
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: tceb3; fc15a12; zgc:55573; wu:fa07b06; wu:fc15a12
Summary: Predicted to act upstream of or within transcription elongation by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of elongin complex. Orthologous to human ELOA (elongin A). [provided by Alliance of Genome Resources, Dec 2024]
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 19

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	19	NC_007130.7 (43822971..43833995)
105	previous assembly	GRCz10 (GCF_000002035.5)	19	NC_007130.6 (44227124..44238148)

Chromosome 19 - NC_007130.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fa07b06.s1 (e-PCR)
- UniSTS:202241

fc15a12.x1 (e-PCR)
- UniSTS:203819

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within transcription elongation by RNA polymerase II	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of elongin complex	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: elongin-A

Names: transcription elongation factor B (SIII), polypeptide 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_213455.1 → NP_998620.1 elongin-A

See identical proteins and their annotated locations for NP_998620.1

Status: PROVISIONAL

Source sequence(s)

BC044429

UniProtKB/TrEMBL

Q803L4

Related

ENSDARP00000130365.1, ENSDART00000171041.2

Conserved Domains (2) summary

cd00183
Location:2 → 75

TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

pfam06881
Location:418 → 516

Elongin_A; RNA polymerase II transcription factor SIII (Elongin) subunit A