U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    zgc:174938 zgc:174938 [ Danio rerio (zebrafish) ]

    Gene ID: 100126020, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    zgc:174938provided by ZNC
    Official Full Name
    zgc:174938provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070928-44
    See related
    Ensembl:ENSDARG00000075622 AllianceGenome:ZFIN:ZDB-GENE-070928-44
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-152b24.2
    Summary
    Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within lipid metabolic process. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See zgc:174938 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (46568354..46572834, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (46601638..46606118, complement)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene protein rapunzel-like Neighboring gene si:dkey-152b24.7 Neighboring gene 1-phosphatidylinositol phosphodiesterase Neighboring gene si:dkey-152b24.6 Neighboring gene 1-phosphatidylinositol phosphodiesterase-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables phosphatidylinositol diacylglycerol-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphoric diester hydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables phosphoric diester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC100126020
    NP_001099170.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105700.1 → NP_001099170.1  uncharacterized protein LOC100126020 precursor

      See identical proteins and their annotated locations for NP_001099170.1

      Status: PREDICTED

      Source sequence(s)
      BC152301
      UniProtKB/TrEMBL
      A0A8M9PJ39, A7MCS9
      Related
      ENSDARP00000101667.1, ENSDART00000115248.3
      Conserved Domains (1) summary
      cd08586
      Location:38 → 282
      PI-PLCc_BcPLC_like; Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      46568354..46572834 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.