rbm28 RNA binding motif protein 28 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rbm28provided by ZNC
Official Full Name: RNA binding motif protein 28provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-960
See related: Ensembl:ENSDARG00000025332 AllianceGenome:ZFIN:ZDB-GENE-040426-960
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:56258
Summary: Predicted to enable RNA binding activity. Predicted to be located in nucleus. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in alopecia, neurologic defects, and endocrinopathy syndrome. Orthologous to human RBM28 (RNA binding motif protein 28). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 18

Exon count:: 23

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	18	NC_007129.7 (10692945..10713414, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	18	NC_007129.6 (10724227..10744696, complement)

Chromosome 18 - NC_007129.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in nucleolus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: RNA-binding protein 28

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200321.1 → NP_956615.1 RNA-binding protein 28

See identical proteins and their annotated locations for NP_956615.1

Status: PROVISIONAL

Source sequence(s)

BC051781

UniProtKB/TrEMBL

Q7ZTZ1

Related

ENSDARP00000034794.4, ENSDART00000034817.5

Conserved Domains (5) summary

cd12413
Location:5 → 77

RRM1_RBM28_like; RNA recognition motif 1 in RNA-binding protein 28 (RBM28) and similar proteins

cd12414
Location:237 → 312

RRM2_RBM28_like; RNA recognition motif 2 in RNA-binding protein 28 (RBM28) and similar proteins

cd12415
Location:438 → 520

RRM3_RBM28_like; RNA recognition motif 3 in RNA-binding protein 28 (RBM28) and similar proteins

cd12416
Location:590 → 683

RRM4_RBM28_like; RNA recognition motif 4 in RNA-binding protein 28 (RBM28) and similar proteins

TIGR01661
Location:2 → 316

ELAV_HUD_SF; ELAV/HuD family splicing factor