smdt1b single-pass membrane protein with aspartate-rich tail 1b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: smdt1bprovided by ZNC
Official Full Name: single-pass membrane protein with aspartate-rich tail 1bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-141212-9
See related: Ensembl:ENSDARG00000098852 AllianceGenome:ZFIN:ZDB-GENE-141212-9
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:ch211-133l11.4
Summary: Predicted to be involved in calcium import into the mitochondrion and mitochondrial calcium ion homeostasis. Predicted to act upstream of or within calcium ion transport. Predicted to be located in mitochondrial inner membrane. Predicted to be part of uniplex complex. Orthologous to human SMDT1 (single-pass membrane protein with aspartate rich tail 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 1

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	1	NC_007112.7 (54062510..54063513, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	1	NC_007112.6 (53402767..53403770, complement)

Chromosome 1 - NC_007112.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in calcium import into the mitochondrion	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within calcium import into the mitochondrion	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within calcium ion transport	IEA Inferred from Electronic Annotation more info
involved_in mitochondrial calcium ion homeostasis	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within mitochondrial calcium ion homeostasis	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within monoatomic ion transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrial inner membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
part_of uniplex complex	IBA Inferred from Biological aspect of Ancestor more info
part_of uniplex complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: single-pass membrane protein with aspartate-rich tail 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001326522.1 → NP_001313451.1 single-pass membrane protein with aspartate-rich tail 1b

Status: VALIDATED

Source sequence(s)

EH505644, EH545643

UniProtKB/TrEMBL

A0A0J9YJ98, A0A8M1P2S1

Related

ENSDARP00000134360.1, ENSDART00000171722.2

Conserved Domains (1) summary

pfam10161
Location:37 → 92

DDDD; Putative mitochondrial precursor protein