U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    tmem230b transmembrane protein 230b [ Danio rerio (zebrafish) ]

    Gene ID: 100124614, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    tmem230bprovided by ZNC
    Official Full Name
    transmembrane protein 230bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070820-4
    See related
    Ensembl:ENSDARG00000069674 AllianceGenome:ZFIN:ZDB-GENE-070820-4
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:162251
    Summary
    Predicted to be involved in synaptic vesicle transport. Predicted to be located in several cellular components, including Golgi apparatus; autophagosome; and late endosome. Predicted to be active in synaptic vesicle. Is expressed in several structures, including caudal fin; hindbrain; immature eye; midbrain; and tail bud. Orthologous to human TMEM230 (transmembrane protein 230). [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See tmem230b in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (4963273..4972966, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (4907011..4916703, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene glutamine amidotransferase class 1 domain containing 3, like Neighboring gene immunoglobulin superfamily, member 9b Neighboring gene adrenoceptor alpha 1Aa Neighboring gene dihydropyrimidinase like 2a

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Igf2bp3 maintains maternal RNA stability and ensures early embryo development in zebrafish. Ren F, et al. Commun Biol, 2020 Mar 3. PMID 32127635, Free PMC Article
    2. Zebrafish Tmem230a cooperates with the Delta/Notch signaling pathway to modulate endothelial cell number in angiogenic vessels. Carra S, et al. J Cell Physiol, 2018 Feb. PMID 28542953
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in synaptic vesicle transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in autophagosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in endomembrane system IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in late endosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in synaptic vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    transmembrane protein 230b
    Names
    transmembrane protein 230b delta 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102640.1 → NP_001096110.1  transmembrane protein 230b

      See identical proteins and their annotated locations for NP_001096110.1

      Status: PREDICTED

      Source sequence(s)
      BC151202
      UniProtKB/TrEMBL
      A0A8M6Z7J2, A7E2V0, F1Q969
      Related
      ENSDARP00000092349.3, ENSDART00000101576.4
      Conserved Domains (1) summary
      pfam05915
      Location:78 → 113
      DUF872; Eukaryotic protein of unknown function (DUF872)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      4963273..4972966 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017357267.3 → XP_017212756.1  transmembrane protein 230b isoform X1

      UniProtKB/TrEMBL
      A0A8M6Z7J2, A7E2V0, F1Q969
      Conserved Domains (1) summary
      pfam05915
      Location:78 → 113
      DUF872; Eukaryotic protein of unknown function (DUF872)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools