snapc1a small nuclear RNA activating complex, polypeptide 1a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: snapc1aprovided by ZNC
Official Full Name: small nuclear RNA activating complex, polypeptide 1aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1031
See related: Ensembl:ENSDARG00000029569 AllianceGenome:ZFIN:ZDB-GENE-040426-1031
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: snapc1; zgc:56450
Summary: Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be part of snRNA-activating protein complex. Orthologous to human SNAPC1 (small nuclear RNA activating complex polypeptide 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 20

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (20314364..20324787, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (20414694..20425211, complement)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in snRNA transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info
involved_in snRNA transcription by RNA polymerase III	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of snRNA-activating protein complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: snRNA-activating protein complex subunit 1a

Names: small nuclear RNA activating complex, polypeptide 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200263.1 → NP_956557.1 snRNA-activating protein complex subunit 1a

See identical proteins and their annotated locations for NP_956557.1

Status: PROVISIONAL

Source sequence(s)

BC049022

UniProtKB/TrEMBL

Q7ZUJ0

Related

ENSDARP00000042375.4, ENSDART00000042376.7

Conserved Domains (1) summary

pfam09808
Location:15 → 198

SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43