U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    cfap100 cilia and flagella associated protein 100 [ Danio rerio (zebrafish) ]

    Gene ID: 767793, updated on 9-Dec-2024

    Summary

    Official Symbol
    cfap100provided by ZNC
    Official Full Name
    cilia and flagella associated protein 100provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060929-352
    See related
    Ensembl:ENSDARG00000111474 AllianceGenome:ZFIN:ZDB-GENE-060929-352
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ccdc37; zgc:153139
    Summary
    Predicted to be located in motile cilium. Orthologous to human CFAP100 (cilia and flagella associated protein 100). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See cfap100 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (22043127..22064158, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (19982904..20003962, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene plexin b1b Neighboring gene THUMP domain containing 3 Neighboring gene si:dkey-156n14.3 Neighboring gene aldehyde dehydrogenase 1 family, member L1 Neighboring gene DEAD-box helicase 17

    Genomic regions, transcripts, and products

    General gene information

    Clone Names

    • MGC153139

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
     
    located_in motile cilium IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    cilia- and flagella-associated protein 100
    Names
    coiled-coil domain containing 37

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076760.1NP_001070228.1  cilia- and flagella-associated protein 100

      See identical proteins and their annotated locations for NP_001070228.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124258
      UniProtKB/TrEMBL
      Q08CF7
      Related
      ENSDARP00000128136.2, ENSDART00000153585.2
      Conserved Domains (1) summary
      pfam13863
      Location:109227
      DUF4200; Domain of unknown function (DUF4200)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      22043127..22064158 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394635.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      57591..78584 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)