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    kbtbd4 kelch repeat and BTB (POZ) domain containing 4 [ Danio rerio (zebrafish) ]

    Gene ID: 393178, updated on 9-Dec-2024

    Summary

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    Official Symbol
    kbtbd4provided by ZNC
    Official Full Name
    kelch repeat and BTB (POZ) domain containing 4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-937
    See related
    Ensembl:ENSDARG00000069271 AllianceGenome:ZFIN:ZDB-GENE-040426-937
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:56204
    Summary
    Orthologous to human KBTBD4 (kelch repeat and BTB domain containing 4). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See kbtbd4 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (20482369..20489363)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (20493303..20500297)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene damage-specific DNA binding protein 2 Neighboring gene protein FAM180A Neighboring gene receptor-associated protein of the synapse, 43kD Neighboring gene immunoglobulin mu DNA binding protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC56204

    General protein information

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    Preferred Names
    kelch repeat and BTB domain-containing protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200209.1 → NP_956503.1  kelch repeat and BTB domain-containing protein 4

      See identical proteins and their annotated locations for NP_956503.1

      Status: PROVISIONAL

      Source sequence(s)
      BC045989
      UniProtKB/TrEMBL
      Q7ZV61
      Related
      ENSDARP00000091441.3, ENSDART00000100668.4
      Conserved Domains (4) summary
      smart00225
      Location:50 → 142
      BTB; Broad-Complex, Tramtrack and Bric a brac
      smart00875
      Location:151 → 247
      BACK; BTB And C-terminal Kelch
      sd00038
      Location:283 → 318
      Kelch; KELCH repeat [structural motif]
      pfam00651
      Location:39 → 142
      BTB; BTB/POZ domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      20482369..20489363
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395022.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      75776..81386
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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