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    slc26a11 solute carrier family 26 member 11 [ Danio rerio (zebrafish) ]

    Gene ID: 327138, updated on 9-Dec-2024

    Summary

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    Official Symbol
    slc26a11provided by ZNC
    Official Full Name
    solute carrier family 26 member 11provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5349
    See related
    Ensembl:ENSDARG00000043021 AllianceGenome:ZFIN:ZDB-GENE-030131-5349
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:64158; wu:fd14d06
    Summary
    Predicted to enable sulfate transmembrane transporter activity. Predicted to be involved in chloride transmembrane transport and sulfate transmembrane transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human SLC26A11 (solute carrier family 26 member 11). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See slc26a11 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (11499720..11520358, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (11470038..11490676, complement)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene MID1 interacting protein 1b Neighboring gene tetraspanin 7 Neighboring gene uncharacterized LOC137488910 Neighboring gene N-sulfoglucosamine sulfohydrolase (sulfamidase) Neighboring gene guanine nucleotide binding protein (G protein) alpha v1 Neighboring gene neuropeptide B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The involvement of SLC26 anion transporters in chloride uptake in zebrafish (Danio rerio) larvae. Bayaa M, et al. J Exp Biol, 2009 Oct. PMID 19801433
    2. Solute Carrier Family 26 Member a2 (slc26a2) Regulates Otic Development and Hair Cell Survival in Zebrafish. Liu F, et al. PLoS One, 2015. PMID 26375458, Free PMC Article
    3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    4. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables monoatomic anion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables secondary active sulfate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sulfate transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in chloride transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in sulfate transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    sodium-independent sulfate anion transporter
    Names
    solute carrier family 26 (anion exchanger), member 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199767.1 → NP_956061.1  sodium-independent sulfate anion transporter

      See identical proteins and their annotated locations for NP_956061.1

      Status: PROVISIONAL

      Source sequence(s)
      BC054629
      UniProtKB/TrEMBL
      Q7T2A2
      Related
      ENSDARP00000063156.4, ENSDART00000063157.5
      Conserved Domains (2) summary
      cd07042
      Location:454 → 546
      STAS_SulP_like_sulfate_transporter; Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function
      TIGR00815
      Location:16 → 541
      sulP; high affinity sulphate transporter 1

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      11499720..11520358 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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