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    lyrm1 LYR motif containing 1 [ Danio rerio (zebrafish) ]

    Gene ID: 436779, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lyrm1provided by ZNC
    Official Full Name
    LYR motif containing 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040718-210
    See related
    Ensembl:ENSDARG00000026281 AllianceGenome:ZFIN:ZDB-GENE-040718-210
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:92830; wu:fj36g10
    Summary
    Orthologous to human LYRM1 (LYR motif containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See lyrm1 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (39510735..39518618, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (39622888..39630771, complement)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene potassium inwardly rectifying channel subfamily J member 12a Neighboring gene protein starmaker-like Neighboring gene dynein axonemal heavy chain 3 Neighboring gene defective in cullin neddylation 1 domain containing 3 Neighboring gene katanin interacting protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    LYR motif containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002506.1 → NP_001002506.1  LYR motif containing protein 1

      See identical proteins and their annotated locations for NP_001002506.1

      Status: PROVISIONAL

      Source sequence(s)
      BC076293
      UniProtKB/Swiss-Prot
      Q6DGP7
      Related
      ENSDARP00000039061.7, ENSDART00000031486.9
      Conserved Domains (1) summary
      pfam05347
      Location:6 → 70
      Complex1_LYR; Complex 1 protein (LYR family)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      39510735..39518618 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6DGP7.1 GenPept UniProtKB/Swiss-Prot:Q6DGP7

    Gene LinkOut

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